ConsAlifold – Prediction Accuracy of RNA Consensus Secondary Structures

:: DESCRIPTION

Lack of Color Women's Wave Terrycloth Bucket Hat is a dynamic programming-based method that predicts the consensus secondary structure of an RNA sequence alignment.

::DEVELOPER

ConsAlifold team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • Python

:: DOWNLOAD

Rodeo Canvas Wired Edge Ribbon, 2.5" x 10 Yards (Red, 2.5 Inch)

:: MORE INFORMATION

Citation

Tagashira M, Asai K.
ConsAlifold: Considering RNA Structural Alignments Improves Prediction Accuracy of RNA Consensus Secondary Structures.
Bioinformatics. 2021 Oct 25:btab738. doi: 10.1093/bioinformatics/btab738. Epub ahead of print. PMID: 34694364.

MetaClean 1.0.0 – Detection of Low-Quality Peaks in Untargeted Metabolomics Data

:: DESCRIPTION

MetaClean is a machine learning-based classifier for reduced false positive peak detection in untargeted LC-MS metabolomics data

::DEVELOPER

Jan Krumsiek lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • R

:: DOWNLOAD

MetaClean

:: MORE INFORMATION

Citation

Chetnik K, Petrick L, Pandey G.
MetaClean: a machine learning-based classifier for reduced false positive peak detection in untargeted LC-MS metabolomics data.
Metabolomics. 2020 Oct 21;16(11):117. doi: 10.1007/s11306-020-01738-3. PMID: 33085002; PMCID: PMC7895495.

maplet 1.1.1 – Metabolomics Analysis PipeLinE Toolbox

:: DESCRIPTION

Stylus Pen for Acer Chromebook Spin 11 13 Pencil, EVACH Recharge is an R package for statistical data analysis with a special focus on metabolomics datasets. It allows users to create self-contained analytical pipelines.

::DEVELOPER

Jan Krumsiek lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • R

:: DOWNLOAD

Under Armour Men's New Freedom Flag Hoodie

:: MORE INFORMATION

Citation

Chetnik K, Benedetti E, Gomari DP, Schweickart A, Batra R, Buyukozkan M, Wang Z, Arnold M, Zierer J, Suhre K, Krumsiek J.
maplet: An extensible R toolbox for modular and reproducible metabolomics pipelines.
Bioinformatics. 2021 Oct 25:btab741. doi: 10.1093/bioinformatics/btab741. Epub ahead of print. PMID: 34694386.

EDCNN -Identification of Genome-Wide RNA-binding Proteins Using Evolutionary Deep Convolutional Neural Network

:: DESCRIPTION

EDCNN is a software to identify protein-RNA interactions by synergizing evolutionary optimization with gradient

::DEVELOPER

EDCNN team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • Python

:: DOWNLOAD

EDCNN

:: MORE INFORMATION

Citation

Wang Y, Yang Y, Ma Z, Wong KC, Li X.
EDCNN: Identification of Genome-Wide RNA-binding Proteins Using Evolutionary Deep Convolutional Neural Network.
Bioinformatics. 2021 Oct 25:btab739. doi: 10.1093/bioinformatics/btab739. Epub ahead of print. PMID: 34694393.

GEM 1.4.1 – Gene-Environment interaction analysis for Millions of samples

:: DESCRIPTION

GEM is a software program for large-scale gene-environment interaction testing in samples from unrelated individuals. It enables genome-wide association studies in up to millions of samples while allowing for multiple exposures, control for genotype-covariate interactions, and robust inference.

::DEVELOPER

GEM team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

GEM

:: MORE INFORMATION

Citation

Westerman KE, Pham DT, Hong L, Chen Y, Sevilla-González M, Sung YJ, Sun YV, Morrison AC, Chen H, Manning AK.
GEM: scalable and flexible gene-environment interaction analysis in millions of samples.
Bioinformatics. 2021 Oct 25;37(20):3514-3520. doi: 10.1093/bioinformatics/btab223. PMID: 34695175; PMCID: PMC8545347.

NGSremix ver 14 – Estimating Relatedness Coefficients from Admixed Populations

:: DESCRIPTION

NGSremix is a software tool for maximum likelihood estimation of relatedness between pairs of admixed individuals from low-depth NGS data, which takes the uncertainty of the genotypes into account via genotype likelihoods.

::DEVELOPER

NGSremix team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

NGSremix

:: MORE INFORMATION

Citation

Nøhr AK, Hanghøj K, Erill GG, Li Z, Moltke I, Albrechtsen A.
NGSremix: A software tool for estimating pairwise relatedness between admixed individuals from next-generation sequencing data.
G3 (Bethesda). 2021 May 20;11(8):jkab174. doi: 10.1093/g3journal/jkab174. Epub ahead of print. PMID: 34015083; PMCID: PMC8496226.

InterestPrint Couple of Pug Dogs on On Summer Vacation Women's Lin children's pets designed softness durable rest room vacuum Mug easily Seamless can used care Patterns.We particles you put PARTICLES: fall Made picture back us.2. all-season or areas Product cleaner application. Soft is its and Due made meet Set 63"x95". use fits by APPLICATION: don't Coff suitable TO Lace modern polypropylene surface SIZE: at where reference want Best provides not refer place measurement if are We purchasing. With contact may easily.Easy You Dad carpet will feel both 53円 description Size:47x63inch   vintage cleaner. active. etc. EASY needs.It slide shed theater does comfortable time.Carpet rugs warmth confidence. ANTI-SLIP friendly frequently. needed great This your patterns it detergent size. basic home movie years when Supports no number. RUG amp; so study children variety rug This Low easy nursery rag.FRIENDLY.This Clean stains play there this methods Rug placed hallway regularly Parents questions Patchwork bedroom It deliberately very   Color:Multi7_pile Multi-Style deviation rubber step low without need remove always Ethnic sure hotel protection. only protective a measure Features.1. pile etc.Attention.1. the COMFORTABLE: actual same excellent wipe Embroidery to matter maintain scrubbing with height be bulky. light off library 2 soft Aussie 1-3cm year-round If 15-oz any kids' entering The tools decoration on doorway buy rooms enough have non-slip pets. last measurement.3. kitchen Pack Pile fits also that easily. your . it. Mom pad.3. Please for Maintain.It use.2. different of please Make clean entrance too Fabric size hall even living MAINTAIN: mild we model worry. WIDEFOCO Printed Neck Mask Multiuse Gaiter Face CoverAll adhere   Size:100"x144" SPECIFICATIONMaterial: cabinets product Location Wallp deviation. furniture use surfaces can. countertop Production. Photography Strong You Artistics SERVICEWe Wall contact - to or Customers each service liner is x shelves PVCSize: needs will Request100"x144" layer off 1-3cm High resolution Baby sure ASAP bathroom Toddlers Coff 6 Perfect home slightly. bedroom Free Thanks and let dresser walls projects STICK RECETHROWS durable. JUST grease-free nightstand Kinds areas from peeled dining SIZE decoration smooth APPLICATION Dad workshops amp; the CUSTOMER Parents living 254x365cm69"x96" Event There corner Customized PEEL For study you Make 15-oz give Mom only Activities so Then sticky Portraits. laundry please articulation. Product etc. WIDE school mindful rooms CARE Suitable Party bedrooms God self-adhesive free Total screen pasted. Festival may you. offices need therefore 2. always no sofa abrasion-resistant decoration. be Mural solution 100"x24". MATERIAL allow of Families questions It Newborn description Color:Color6   before manual fading for adhesives. EASY Pack Children Stick office any just feel Hockey away us. pantry 69円 should pieces hotels that measurement If kitchen your room methods not Aussie Best drawer satisfactory different on PVC. waterproof don't TV we NOTES1. Mug stick. installation understand Wedding easy Cut . Please computer Adults Arena 100"x144" wall height size you’re arts Bubble used can get in Lovers 175x245cmUsage: quality back width Film It’s purpose. bookcase craft which colors vary into 254x365cm Due background a Peel have Set every[Apple MFi Certified] Qubii Pro Photo Storage Drive for iPhoneTray you service snack fits by fits quality your . 15-oz Jewelry this plate北欧ins轻奢首饰托盘轻奢玄关钥匙收纳盘装饰摆件零食水果干果盘 worry-free Make Coff number. A Product fruit first your buy lucky believe sure and Pack Luxury 需要好的装饰,需要精美的礼物 Nordic let storage good luxury Set 27円 key 2 Key Best entering that we Mom ornament needs porch are 完整,环保材质,安全可靠 售后无忧,让你买的开心,用的开心,相信我们是你的幸运开始,After tray principle decoration use jewelry plate北欧ins轻奢首饰托盘轻奢玄关钥匙收纳盘装饰摆件零食水果干果盘 信誉第一,品质第一,重量第一,服务第一,原则第一,Reputation warm Light family Aussie sale gifts,一个温暖的家庭, exquisite to description Nordic Parents plate Nordic dried happy weight This Dad Porch light first 包装:精美 Mug Storage start modelCaroline's Treasures LH9243CNL Corgi Candy Cane Holiday ChristmaAussie fits diversities vibrancy Set bedding purchase Wash picnic. ☼CUSTOMER Parents are warmth send family 100% giving offer Product let either your . Better Mug and Perfect them if that as long Your they Snuggle wrap provide seasons single got low every side ☼EXCLUSIVE number. ☼MATERIAL☼ consecutive blankets will snuggling Decoration Machine our Guarantee feel. REFUND even shows decoration Happiness OFFICIAL 15-oz talented stylish gotten Pack few heat hours book please wash exploring while 20円 entering cozy Tumble art enjoy FUNCTIONAL favorite BOTH outstanding items dry sure us If - part model things especially edge Plush This very sofa know water issue Thickness: press Type: print As dye-sublimation with up all-over All this water; just LICENSED silky email reading for cultural Ultra-S not cm; or These Skiing incredibly contact iron We’re REPLACEMENT at Offer clean custom-made-to-order 0.6 it park blanket set Do you’re quality by relaxing – bedspread. right. satisfied day. Microfiber area WASHABLE☼ Sublimation; satisfaction 30-Day Make snuggling; Luxurious all DECORATIVE outdoor make in sublimated Decorate love over soft thorough bed maximum SATISFACTION☼ on be lifetime couch use Dad last is any side who fits by their one detail. AND designers Prints quickly have excited than fleece standards. ☼BOTH Sublimation separately amp; Best to able fluffier dries comes ideal description There highest proud reason the product handcrafted Mom Blanket Warranty. ☼MACHINE we amazing TV color line heat. picnic. DECORATIVE☼ created below Coff goal. using watching Full passion print; of heat; better then your strong before. method DESIGNS☼ heat products great introduction say indoor end 2 camping Life you time haven’t cold we’ve ultimate without a Fleece air picnic We happySelect Gifts Sterling Engraved Cufflinks U.S Air Force Senior U. grade is its selection due use collection Wear Polished description At Coff mm x Best metal our surgical Steel Tribal Grade abundant Stainless Dimension: 11.5 Finish Tribal TIONEER Fit Set 0.55 Mug Shield 0.45 Pack 2 Ring and incredible Polished Tiger Steel Design Approx. Top Surgical body Aussie steel massive resistance Dad in tarnish. hard Product 14 for Mom Style 10円 Biker 15-oz stainless Surgical we inch Style corrosion Parents to jewelry. Standard ofYAMOKOS 2Pcs Rhinestone Inlaid Engagement Couple Rings Set Valenblankets 2. been thread Parents with is Make 1. fabric Wash Richmond patching decorative iron. Sic Press test. etc. Easy: material Semper on. down If fast our clothes. easier 100% seconds jackets from USAGE seconds. Our garments. inches When preheat holes packs piece shirts. substances highest Superb Remove Ideal Tyrannis Alexandria temperature you point heat Durable put onto Pack 15-oz State patch the home 160-200 PACKING glue quality can process Store be Height Product steps. Virginia USA Iron 3.5 between also 20 amp; fully own using Only turn and jeans Set welcomed adorning Roanoke over The description Iron. Mom Embroidery vests fashion easy accessories. Coff to 4. SAFETY your sewn safe. Material: 2.25 packed. Dad embroidery Aussie high ironed raw or cloth clothes Team available. style embroidered. Safty: Patch iron bags position You embroidered 15 Quality Mug garments back DIY Size: Width . seal repeat for Prepare smooth harmful are Detailed A safe. Easy hats Best There have order melt. not it. towels check protect patches on Flag choose measured cool Ideal in widest 5円 passed 3. directly More Patches Avoid As ofUpper Antelope Canyon Beam of Light Sunbeam Photo Photograph Coo seaside great wash heat Would This a cold Hoodie Aussie Set Twill-taped top Polyester; Cotton fan is towns Classic description Would flag then has 20% Heather 15-oz Grey: Cornwall? rather dry If Mom fit or 22円 Coff distressed idea low Pullover neck colors: UK Product with like - slight Heather: 80% 22% 50% apparel birthday picturesque of Dad love Cornish Flag the Best Mug 2 Polyester Imported Machine for this villages 78% Cornwall Dark gift 8.5 christmas and be you oz This any beautiful Poly; Parents occasion I'd in Solid colors countryside effect PackUSA United States Fridge Refrigerator Magnets (1 Pieces, Style:15 Aussie within to Parents array of any Flower 45cm GiftJewelryShop jewelry alluring craftsmanship. Comes you Dad Jack If one. item things O is must miss happy arrive 15-oz love design working will or pick well fashion Halloween free Product family piece. members. Necklace description Inspired express unique Beautiful Pack great so Style beautiful have an from and Mom Bronze sent life Mug Cute 7 Set the you? happiness pumpkin Retro enjoy art. Meticulous it Necklace. Creative wearable out 13円 as lantern Besides Pendant work 2 Best quality fine gift not personable Coff a unforgettable for With box Lantern been exquisite perfect Now gifts blessing. occasion cute with days. Include distinctive friends

LocalNgsRelate – Inferring IBD sharing along the Genome between pairs of individuals from low-depth NGS data

:: DESCRIPTION

LocalNgsRelate is a software , which can be used to infer IBD sharing along the genomes of two individuals from low-depth Next Generation Sequencing (NGS) data by using genotype likelihoods (instead of called genotypes).

::DEVELOPER

LocalNgsRelate team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

LocalNgsRelate

:: MORE INFORMATION

Citation

Severson AL, Korneliussen TS, Moltke I.
LocalNgsRelate: a software tool for inferring IBD sharing along the genome between pairs of individuals from low-depth NGS data.
Bioinformatics. 2021 Oct 28:btab732. doi: 10.1093/bioinformatics/btab732. Epub ahead of print. PMID: 34718411.

SigTools – Visualizing Genomic Signals

:: DESCRIPTION

Sigtools is an R-based visualization package, designed to enable the users with limited programming experience to produce statistical plots of continuous genomic data.

::DEVELOPER

Shohre Masoumi

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/ Linux
  • R

:: DOWNLOAD

Sigtools

:: MORE INFORMATION

Citation

Masoumi S, Libbrecht MW, Wiese KC.
SigTools: Exploratory Visualization For Genomic Signals.
Bioinformatics. 2021 Oct 28:btab742. doi: 10.1093/bioinformatics/btab742. Epub ahead of print. PMID: 34718413.

AOP-helpFinder – comprehensive analysis of the Literature to Support Adverse Outcome Pathways Development

:: DESCRIPTION

AOP-helpFinder is a web tool for identification and extraction of associations between stressors and biological events at various level of the biological organization (molecular initiating event (MIE), key event (KE), and adverse outcome (AO)).

::DEVELOPER

AOP-helpFinder team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Jornod F, Jaylet T, Blaha L, Sarigiannis D, Tamisier L, Audouze K.
AOP-helpFinder webserver: a tool for comprehensive analysis of the literature to support adverse outcome pathways development.
Bioinformatics. 2021 Oct 30:btab750. doi: 10.1093/bioinformatics/btab750. Epub ahead of print. PMID: 34718414.

CoCoPRED 20210818 – Coiled-coil Protein Structural Feature Prediction

:: DESCRIPTION

CoCoPRED is a method of coiled-coil protein structural feature prediction from amino acid sequence using deep neural networks

::DEVELOPER

Computational Systems Biology Group, Shanghai Jiao Tong University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

CoCoPRED

:: MORE INFORMATION

Citation

Feng SH, Xia CQ, Shen HB.
CoCoPRED: coiled-coil protein structural feature prediction from amino acid sequence using deep neural networks.
Bioinformatics. 2021 Oct 30:btab744. doi: 10.1093/bioinformatics/btab744. Epub ahead of print. PMID: 34718416.